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| ReactionOxidationCO (Libpf::Persistency::Defaults defaults, uint32_t id=0, Persistency *persistency=nullptr, Persistent *parent=nullptr, Persistent *root=nullptr) |
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| ~ReactionOxidationCO () |
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const std::string & | type (void) const override |
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| STRING (option, "Calculation option", "z") |
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| ReactionYield (Libpf::Persistency::Defaults defaults, uint32_t id=0, Persistency *persistency=nullptr, Persistent *parent=nullptr, Persistent *root=nullptr) |
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const std::string & | type (void) const override |
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void | setup (void) override |
| performs initializations required immediately before solution More...
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void | precalc (void) override |
| calculate actconv but not write in destination phase More...
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void | bound (void) override |
| bound conversion More...
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void | postcalc (void) override |
| update z or conv according to option and write into destination phase More...
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void | calculate (int level=0) override |
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void | estimate (const Quantity &K) |
| useful for equilibrium reactions, estimates a mid-range conv to avoid exhaustion of any reactant/product More...
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| Reaction (Libpf::Persistency::Defaults defaults, uint32_t id=0, Persistency *persistency=nullptr, Persistent *parent=nullptr, Persistent *root=nullptr) |
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| ~Reaction (void) |
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| QUANTITY (conv, "Rate of Reaction", 0.0, UnitArray(INT_MAX)) |
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| QUANTITY (actconv, "Actual rate of Reaction", 0.0, UnitArray(INT_MAX)) |
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| QUANTITY (z, "Fractional conversion in terms of key component", 0.0, "") |
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| INTEGER (keycomp, "Key component", -1) |
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ObjectiveNleAd * | objectiveFunction (void) override |
| returns a pointer to the model's objective function More...
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void | initializeNonPersistents (void) override |
| estimates hidden, non-persistent unknowns from the current results More...
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void | setcoeff (int i, double val) |
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void | setcoeff (std::string n, double val) |
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const Value & | outflow (int i) const |
| return outlet flow for component i More...
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void | setout (Phase::Mass *out) |
| set internal pointer to point at the destination stream's total phase More...
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Value | actualRate (int i) |
| return actual rate of reaction for component i More...
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virtual void | precalc (void)=0 |
| calculate actconv but not write in destination phase More...
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virtual void | bound (void)=0 |
| bound conversion More...
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virtual void | postcalc (void)=0 |
| update z or conv according to option and write into destination phase More...
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const std::string & | type (void) const override |
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void | setVanishingHeterogeneousComponentReactant (void) |
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void | setVanishingHeterogeneousComponentProduct (void) |
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Libpf::Utility::Category | category (void) const override |
| return model Category More...
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| Model (Libpf::Persistency::Defaults defaults, uint32_t id, Persistency *persistency, Persistent *parent, Persistent *root) |
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| INTEGER (nCalculations, "Number of times the model has been calculated", 0) |
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| STRINGVECTOR (errors, "Errors from the last computation", 0, "") |
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| STRINGVECTOR (warnings, "Warnings from the last computation", 0, "") |
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bool | isPristine (void) const |
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void | unSetInput (void) |
| wipes out all tags marked as inputs More...
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void | reportMessages (void) |
| recursively collect status of all sub-objects and report to parent More...
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void | resetErrors (void) |
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void | setWarning (std::string s) |
| send new warning message to local queue More...
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void | setError (std::string s) |
| send new error message to local queue More...
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void | reportWarning (std::string s) |
| propagate warning message from sub-object to local queue More...
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void | reportError (std::string s) |
| propagate error message from sub-object to local queue More...
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void | setCalculated (void) |
| increments nCalculations counter and unsets pristinity More...
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void | setPristineRecursive (void) |
| force next calculation to restart as if the model had never been calculated during this runtime session, also for all contained objects More...
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void | setPristine (void) |
| force next calculation to restart as if the model had never been calculated during this runtime session More...
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void | setRunTime (double t) |
| set the run time More...
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virtual Libpf::Utility::Category | category (void) const =0 |
| return model Category More...
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virtual void | calculate (int level=0)=0 |
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virtual void | setup (void)=0 |
| performs initializations required immediately before solution More...
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virtual int | maximumIterations (void) |
| returns default maximum iterations for main computation; defaults to 200 More...
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virtual void | initializeNonPersistents (void)=0 |
| estimates hidden, non-persistent unknowns from the current results More...
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virtual ObjectiveNleAd * | objectiveFunction (void)=0 |
| returns a pointer to the model's objective function More...
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std::ostream & | print (std::ostream &os, bool strings, bool quantities, bool integers, bool recursive) const |
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std::ostream & | printFull (std::ostream &) const |
| print the model quantities, including derivative info, in text format to os More...
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void | printHtml (const char *dir) const |
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virtual void | printSvg (const char *fileName, bool tiny, bool raster, int offset) |
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void | printSvgAll (const char *dir, bool tiny, bool raster, int offset, std::vector< std::string > &list) |
| Recursively output the model and all descendants in SVG format as separate id.SVG files in the directory dir. More...
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virtual void | printXml (const char *dir, Model *precedingSibling, Model *followingSibling) const |
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void | printXmlToc (std::ofstream &toc, int indent) const |
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void | printOds (std::ofstream &ods) const |
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| Object (Libpf::Persistency::Defaults defaults, uint32_t id=0, Persistency *persistency=nullptr, Persistent *parent=nullptr, Persistent *root=nullptr) |
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Libpf::Persistency::Defaults | defaults (void) const |
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std::ostream & | printJson (std::ostream &os, int level=0) const override |
| print Node in JSON format More...
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void | readVariables (Persistency *persistency) override |
| reads Q, QV and QM from persistency More...
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void | readParameters (Persistency *persistency) override |
| reads I, IV, S and SV from persistency More...
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Node & | operator= (const Node &) override |
| copy assignment operator More...
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Node & | operator= (Node &&other) override |
| move assignment More...
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| ~Object (void) |
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const std::string & | type (void) const override |
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Object & | at (const std::string &fullRelativeTag) |
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const Object & | at (const std::string &fullRelativeTag) const |
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Object & | at (const std::string &fullRelativeTag, int index) |
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const Value & | Q (const std::string &tag) const |
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const Value & | Q (const std::string &tag, int index) const |
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const Value & | Q (const std::string &tag, int row, int column) const |
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Value & | Q (const std::string &tag) |
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Value & | Q (const std::string &tag, int index) |
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Value & | Q (const std::string &tag, int row, int column) |
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const Value & | Q (const std::string &tag, std::string componentName) const |
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Value & | Q (const std::string &tag, std::string componentName) |
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const Value & | Q (const std::string &tag, int index, std::string componentName) const |
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Value & | Q (const std::string &tag, int index, std::string componentName) |
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const int & | I (const std::string &tag) const |
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const int & | I (const std::string &tag, int index) const |
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int & | I (const std::string &tag) |
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int & | I (const std::string &tag, int index) |
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const std::string & | S (const std::string &tag) const |
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const std::string & | S (const std::string &tag, int index) const |
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std::string & | S (const std::string &tag) |
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std::string & | S (const std::string &tag, int index) |
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bool | operator!= (const Object &rhs) const |
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bool | operator== (const Object &rhs) const |
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bool | compareParameters (const Object &rhs) const |
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bool | existsI (const std::string &tag) const |
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bool | existsS (const std::string &tag) const |
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bool | existsQ (const std::string &tag) const |
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void | push (void) const |
| store the current status of the object and all its sub-objects in the last-in-first-out queue of real variables values More...
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void | pop (void) |
| restore the status of the object and all its sub-objects from the last-in-first-out queue of real variables values More...
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void | clear (void) const |
| clear the last-in-first-out queue of real variables values used for storing and retrieving the status More...
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const RangeQuantities | quantities (void) |
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const ConstRangeQuantities | quantities (void) const |
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| Node (Libpf::Persistency::Defaults defaults, uint32_t id=0, Persistency *persistency=nullptr, Persistent *parent=nullptr, Persistent *root=nullptr) |
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| Node (const Node &other) |
| copy constructor More...
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| Node (Node &&other) |
| move constructor More...
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virtual std::unique_ptr< Node > | clone (void) const |
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virtual Node & | operator= (const Node &other) |
| copy assignment operator copies all elements but root which is set to nullptr More...
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virtual Node & | operator= (Node &&other) |
| move assignment More...
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| ~Node () |
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int | insert (Persistency *persistency) const override |
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int | update (Persistency *persistency) const override |
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void | restore (Persistency *persistency) override |
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void | remove (Persistency *persistency) const override |
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uint32_t | rootId (void) const override |
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uint32_t | range (void) const override |
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uint32_t | getId (void) override |
| returns the next available id and increments the internal counter More...
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const std::string & | type (void) const override |
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virtual std::ostream & | printJson (std::ostream &os, int level=0) const |
| print Node in JSON format More...
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Node & | addChild (std::string type, uint32_t id, Persistency *persistency) |
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Node & | addChild (std::string type, Libpf::Persistency::Defaults defaults) |
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Node & | addChild (const Node &child) |
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Node & | addChild (std::unique_ptr< Node > child) |
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std::unique_ptr< Node > | prune (const std::string &tag) |
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const Node & | child (const std::string &tag) const |
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Node & | at (const std::string &fullRelativeTag) |
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const Node & | at (const std::string &fullRelativeTag) const |
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uint32_t | descendants (void) const |
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Persistent * | root (void) const |
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void | renameChild (const std::string &oldName, const std::string &newName) |
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bool | existsChild (std::string tag) const |
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bool | exists (uint32_t id) |
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Node & | search (uint32_t id) |
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bool | operator!= (const Node &rhs) const |
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bool | operator== (const Node &rhs) const |
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virtual void | readVariables (Persistency *) |
| reads Q, QV and QM from persistency More...
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virtual void | readParameters (Persistency *) |
| reads I, IV, S and SV from persistency More...
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bool | isRestored (void) const |
| return whether the Node has just been retrieved from persistent storage More...
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void | setIcon (std::string icon, double width, double height) |
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bool | hasIcon (void) const |
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std::string | iconName (bool raster) const |
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double | iconWidth (void) const |
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double | iconHeight (void) const |
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const Range | children (void) |
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const ConstRange | children (void) const |
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| Persistent (const std::string &tag, const std::string &description, Persistent *parent, uint32_t id) |
| main constructor More...
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| Persistent (const Persistent &) |
| copy constructor More...
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Persistent & | operator= (const Persistent &) |
| copy assignment More...
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| Persistent (Persistent &&other) |
| move constructor More...
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Persistent & | operator= (Persistent &&other) |
| move assignment More...
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| ~Persistent (void) |
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uint32_t | id (void) const |
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std::string | uuid (void) const |
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uint32_t | parentId (void) const |
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virtual uint32_t | rootId (void) const =0 |
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virtual uint32_t | range (void) const =0 |
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virtual uint32_t | getId (void)=0 |
| returns the next available id and increments the internal counter More...
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double | created_at (void) const |
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double | updated_at (void) const |
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void | updated_at (double u) const |
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virtual int | insert (Persistency *persistency) const =0 |
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virtual int | update (Persistency *persistency) const =0 |
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virtual void | restore (Persistency *persistency)=0 |
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virtual void | remove (Persistency *persistency) const =0 |
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| Item (const Item &other) |
| copy constructor copies all elements but parent which is set to nullptr More...
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Item & | operator= (const Item &other) |
| copy assignment operator copies all elements but parent which is set to nullptr More...
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| Item (const std::string &tag, const std::string &description, Persistent *parent) |
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| Item (Item &&other) |
| move constructor More...
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Item & | operator= (Item &&other) |
| move assignment operator More...
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virtual | ~Item () |
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const std::string & | tag () const |
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const std::string & | description () const |
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std::string | fullTag () const |
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const Persistent * | parent () const |
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virtual const std::string & | type () const =0 |
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void | setTag (const std::string &tag) |
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void | setDescription (const std::string &description) |
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void | setWideTag (const std::wstring &tag) |
| wide-character variant, More...
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void | setWideDescription (const std::wstring &description) |
| wide-character variant, More...
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bool | operator!= (const Item &rhs) const |
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bool | operator== (const Item &rhs) const |
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| Diagnostic (void) |
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void | setVerbosity (int verbosity) |
| sets the verbosity level for this instance More...
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int | verbosity (void) const |
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bool | silent |
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std::vector< Quantity > | coeff |
| Vector of molar stoichiometric coefficients (indexed as the list of components) More...
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std::vector< Quantity > | coeffm |
| Vector of mass based stoichiometric coefficient (indexed as the list of components) More...
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void | init (void) |
| initialize for mass based on molar calculation More...
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void | printSvgXlink (std::ostream &svg, const std::string &link, double width, double height) |
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void | addComponentVectorVariable (std::vector< Quantity > &variable, const std::string &tag, const std::string &description, Quantity::ValueType value) |
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template<typename T > |
void | addSubObjects (int verbosityFile, Libpf::Persistency::Defaults defaults, Persistency *persistency, int count, const std::string &optionKey, const std::string &typeKey, const std::string &tagKey, const std::string &description, std::vector< T * > &vector) |
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int | retrieveInteger (const Libpf::Persistency::Defaults &defaults, uint32_t id, Persistency *persistency, std::string tag, int min, int max, int def=-1) |
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std::string | retrieveString (const Libpf::Persistency::Defaults &defaults, uint32_t id, Persistency *persistency, std::string tag, const std::string def) |
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template<class T > |
void | addVariable (T &variable) |
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template<class T > |
void | addVectorVariable (std::vector< T > &variable, const std::string &tag, const std::string &description, uint32_t size, typename T::ValueType value) |
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| Object (const Object &other) |
| copy constructor More...
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| Object (Object &&other) |
| move constructor More...
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Object & | operator= (const Object &) |
| copy assignment operator More...
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Object & | operator= (Object &&other) |
| move assignment operator More...
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int | offset (void) const |
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virtual | ~Diagnostic ()=default |
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std::vector< Quantity > * | my_coeffp |
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Value * | ni |
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Phase::Mass * | out_ |
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int | vanishingHeterogeneousComponent_ |
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std::map< std::string, Integer * > | integers_ |
| collection of integer variables More...
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std::map< std::string, IntegerVector * > | integerVectors_ |
| collection of integer variable vectors More...
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std::map< std::string, Quantity * > | quantities_ |
| collection of real variables More...
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std::map< std::string, QuantityVector * > | quantityVectors_ |
| collection of real variable vectors More...
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std::map< std::string, QuantityMatrix * > | quantityMatrices_ |
| collection of real variable matrices More...
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std::map< std::string, String * > | strings_ |
| collection of string variables More...
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std::map< std::string, StringVector * > | stringVectors_ |
| collection of string variable vectors More...
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std::map< std::string, std::unique_ptr< Node > > | children_ |
| the collection of direct descendants More...
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Persistent * | parent_ |
| pointer to the parent Persistent; set to this by the constructor if Item is self-standing or a root Persistent of a tree More...
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int | verbosityInstance |
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static const std::string | type_ |
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